Genetic File Format Conversion System
Complete tutorial hub for converting genotype data between consumer, research, and imputation-oriented file formats.
GeneticsGenotype FormatsConversion System
Genetic File Format Conversion
Genetic File Format Conversion resources and learning tools.
A complete genotype file conversion learning system covering VCF, RAW, 23andMe, AncestryDNA, PLINK BED/BIM/FAM, PED/MAP, GEN/SAMPLE, and HAPS/LEGEND/SAMPLE formats.
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Genetic File Format Conversion
A complete learning system for understanding genetic file formats and conversion workflows used in consumer genomics, GWAS, imputation, and research data preparation.
1 organized weeks11 visual pages
Learning area
A focused collection for this topic.
These pages are grouped as a learning collection. More lecture notes, examples, and practical tools can be added without changing the page structure.
11
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Imported animated and interactive pages
These pages were migrated from the Visual Learning teaching site and wrapped with MuhammadLab navigation, search, sitemap support, and category context.
Usage Guide
Quick usage guide for running the genotype conversion workflow and understanding the tutorial structure.
UsageWorkflowGenotype Conversion
VCF Format Guide
Learn the Variant Call Format structure used for storing genetic variants, genotypes, metadata, and sample calls.
VCFVariantsGenotypes
RAW Genotype Format Guide
Understand raw genotype tables and how marker-level genotype calls are represented for conversion workflows.
RAWGenotype TableSNPs
23andMe File Format Guide
Guide to 23andMe-style genotype files, SNP identifiers, alleles, chromosomes, positions, and conversion considerations.
23andMeConsumer GenomicsSNPs
AncestryDNA File Format Guide
Guide to AncestryDNA genotype files and how their columns can be interpreted before conversion.
AncestryDNAConsumer GenomicsGenotype Files
PLINK BED/BIM/FAM Guide
Learn the PLINK binary genotype format family: BED genotype matrix, BIM marker map, and FAM sample metadata.
PLINKBED BIM FAMGWAS
PLINK PED/MAP Guide
Learn the text-based PLINK PED and MAP formats used for sample pedigree information and marker maps.
PLINKPED MAPPedigree
GEN/SAMPLE Format Guide
Guide to genotype probability files and sample metadata commonly used in imputation and association workflows.
GEN SAMPLEImputationProbabilities
HAPS/LEGEND/SAMPLE Format Guide
Learn haplotype, legend, and sample files used in genetic imputation and population-genetics pipelines.
HAPSLEGENDSAMPLE
Complete Documentation PDF
Downloadable full PDF documentation for the genotype file format conversion tutorial.
PDFDocumentationReference
Available resources
Start with these resources
This category combines current MuhammadLab pages that match the topic. More lecture guides and interactive tools can be added here as the lab grows.